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1

Maize HapMap2 identifies extant variation from a genome in flux

Chia, Jer-Ming, Song, Chi, Bradbury, Peter J, Costich, Denise, de Leon, Natalia, Doebley, John, Elshire, Robert J, Gaut, Brandon, Geller, Laura, Glaubitz, Jeffrey C, Gore, Michael, Guill, Kate E, Holl

Journal:

Nature Genetics

Year:

2012

Language:

english

File:

PDF, 142 KB

english, 2012

2

EVOLUTIONARY RADIATION OF “STONE PLANTS” IN THE GENUS ARGYRODERMA (AIZOACEAE): UNRAVELING THE EFFECTS OF LANDSCAPE, HABITAT, AND FLOWERING TIME

Allan G. Ellis, Arthur E. Weis, Brandon S. Gaut

Journal:

Year:

2006

Language:

english

File:

PDF, 1.35 MB

english, 2006

3

Seasonal Changes in a Maize-Based Polyculture of Central Mexico Reshape the Co-occurrence Networks of Soil Bacterial Communities

Rebollar, Eria A., Sandoval-Castellanos, Edson, Roessler, Kyria, Gaut, Brandon S., Alcaraz, Luis D., Benítez, Mariana, Escalante, Ana E.

Journal:

Frontiers in Microbiology

Year:

2017

Language:

english

File:

PDF, 3.76 MB

english, 2017

4

Demography and its effects on genomic variation in crop domestication

Gaut, Brandon S., Seymour, Danelle K., Liu, Qingpo, Zhou, Yongfeng

Journal:

Year:

2018

Language:

english

File:

PDF, 7.21 MB

english, 2018

5

Large chromosomal variants drive adaptation in sunflowers

Zhou, Yongfeng, Gaut, Brandon S.

Journal:

Year:

2020

File:

PDF, 985 KB

2020

6

Evolutionary dynamics of grass genomes

Brandon S. Gaut

Journal:

New Phytologist

Year:

2002

Language:

english

File:

PDF, 492 KB

english, 2002

7

Genetic diversity in domesticated soybean (Glycine max) and its wild progenitor (Glycine soja) for simple sequence repeat and single-nucleotide polymorphism loci

Ying-Hui Li, Wei Li, Chen Zhang, Liang Yang, Ru-Zhen Chang, Brandon S. Gaut, Li-Juan Qiu

Journal:

New Phytologist

Year:

2010

Language:

english

File:

PDF, 1.11 MB

english, 2010

8

Molecular and functional diversity of maize

Edward S Buckler, Brandon S Gaut, Michael D McMullen

Journal:

Current Opinion in Plant Biology

Year:

2006

Language:

english

File:

PDF, 151 KB

english, 2006

9

Plant conserved non-coding sequences and paralogue evolution

Steven Lockton, Brandon S. Gaut

Journal:

Trends in Genetics

Year:

2005

Language:

english

File:

PDF, 125 KB

english, 2005

10

The Molecular Genetics of Crop Domestication

John F. Doebley, Brandon S. Gaut, Bruce D. Smith

Journal:

Year:

2006

Language:

english

File:

PDF, 1.12 MB

english, 2006

11

The Patterns and Causes of Variation in Plant Nucleotide Substitution Rates

Gaut, Brandon, Yang, Liang, Takuno, Shohei, Eguiarte, Luis E.

Journal:

Annual Review of Ecology Evolution and Systematics

Year:

2011

Language:

english

File:

PDF, 603 KB

english, 2011

12

Epigenetics and plant genome evolution

Diez, Concepcion M, Roessler, Kyria, Gaut, Brandon S

Journal:

Current Opinion in Plant Biology

Year:

2014

Language:

english

File:

PDF, 828 KB

english, 2014

13

Plant Molecular Evolution || Myrosinase: gene family evolution and herbivore defense in Brassicaceae

Doyle, Jeff J., Gaut, Brandon S.

Year:

2000

Language:

english

File:

PDF, 4.07 MB

english, 2000

14

Plant Molecular Evolution || Genome evolution in polyploids

Doyle, Jeff J., Gaut, Brandon S.

Year:

2000

Language:

english

File:

PDF, 4.40 MB

english, 2000

15

Evolution of DNA Methylation Patterns in the Brassicaceae is Driven by Differences in Genome Organization

Seymour, Danelle K., Koenig, Daniel, Hagmann, Jörg, Becker, Claude, Weigel, Detlef, Gaut, Brandon S.

Journal:

Year:

2014

Language:

english

File:

PDF, 3.38 MB

english, 2014

16

Mechanistic and evolutionary questions about epigenetic conflicts between transposable elements and their plant hosts

Bousios, Alexandros, Gaut, Brandon S

Journal:

Current Opinion in Plant Biology

Year:

2016

Language:

english

File:

PDF, 1.28 MB

english, 2016

17

Genetic Diversity in Seven Perennial Ryegrass ( L.) Cultivars Based on SSR Markers

Kubik, Christine, Sawkins, Mark, Meyer, William A., Gaut, Brandon S.

Journal:

Year:

2001

Language:

english

File:

PDF, 121 KB

english, 2001

18

Modeling Interactions between Transposable Elements and the Plant Epigenetic Response: A Surprising Reliance on Element Retention

Roessler, Kyria, Bousios, Alexandros, Meca, Esteban, Gaut, Brandon S

Journal:

Genome Biology and Evolution

Year:

2018

Language:

english

File:

PDF, 635 KB

english, 2018

19

The Limits to Estimating Population-genetic Parameters with Temporal Data

Lynch, Michael, Ho, Wei-Chin, Gaut, Brandon

Journal:

Genome Biology and Evolution

Year:

2020

Language:

english

File:

PDF, 422 KB

english, 2020

20

Co-expression clusters and allele-specific expression in metabolism-based herbicide resistance

Giacomini, Darci A, Patterson, Eric L, KÃ¼pper, Anita, Beffa, Roland, Gaines, Todd A, Tranel, Patrick J, Gaut, Brandon

Journal:

Genome Biology and Evolution

Year:

2020

File:

PDF, 789 KB

2020

21

Gene capture by transposable elements leads to epigenetic conflict in maize

Muyle, Aline, Seymour, Danelle, Darzentas, Nikos, Primetis, Elias, Gaut, Brandon S., Bousios, Alexandros

Journal:

Molecular Plant

Year:

2020

File:

PDF, 7.09 MB

2020

22

Relative Rates of Nucleotide Substitution in the Chloroplast Genome

Brandon S. Gaut, Spencer V. Muse, Michael T. Clegg

Journal:

Molecular Phylogenetics and Evolution

Year:

1993

File:

PDF, 697 KB

1993

23

Phylogenetic analysis, genome evolution and the rate of gene gain in the Herpesviridae

Nan Wang, Pierre F. Baldi, Brandon S. Gaut

Journal:

Molecular Phylogenetics and Evolution

Year:

2007

Language:

english

File:

PDF, 826 KB

english, 2007

24

Relative rates of nucleotide substitution at therbcl locus of monocotyledonous plants

Brandon S. Gaut, Spencer V. Muse, W. Dennis Clark, Michael T. Clegg

Journal:

Journal of Molecular Evolution

Year:

1992

Language:

english

File:

PDF, 1.09 MB

english, 1992

25

The Contribution of Transposable Elements to Expressed Coding Sequence inArabidopsis thaliana

Steven Lockton, Brandon S. Gaut

Journal:

Journal of Molecular Evolution

Year:

2009

Language:

english

File:

PDF, 463 KB

english, 2009

26

The Interaction of Protein Structure, Selection, and Recombination on the Evolution of the Type-1 Fimbrial Major Subunit (fimA) fromEscherichia coli

Andrew S. Peek, Valeria Souza, Luis E. Eguiarte, Brandon S. Gaut

Journal:

Journal of Molecular Evolution

Year:

2001

Language:

english

File:

PDF, 1.69 MB

english, 2001

27

A Survey of the Molecular Evolutionary Dynamics of Twenty-Five Multigene Families from Four Grass Taxa

Liqing Zhang, Sergei Kosakovsky Pond, Brandon S. Gaut

Journal:

Journal of Molecular Evolution

Year:

2001

Language:

english

File:

PDF, 814 KB

english, 2001

28

Neutral and Nonneutral Mitochondrial Genetic Variation in Deep-Sea Clams from the Family Vesicomyidae

Andrew S. Peek, Brandon S. Gaut, Robert A. Feldman, James P. Barry, Randall E. Kochevar, Richard A. Lutz, Robert C. Vrijenhoek

Journal:

Journal of Molecular Evolution

Year:

2000

Language:

english

File:

PDF, 759 KB

english, 2000

29

Fine scale genetic structure in the wild ancestor of maize (Zea mays ssp. parviglumis)

JOOST VAN HEERWAARDEN, JEFFREY ROSS-IBARRA, JOHN DOEBLEY, JEFFREY C. GLAUBITZ, JOSE DE JESÚS SÁNCHEZ GONZÁLEZ, BRANDON S. GAUT, LUIS E. EGUIARTE

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 627 KB

english, 2010

30

Evolution in the Genus Zea: Lessons from Studies of Nucleotide Polymorphism

BRANDON S. GAUT

Journal:

Plant Species Biology

Year:

1996

File:

PDF, 2.56 MB

1996

31

Spatial scale of local adaptation and population genetic structure in a miniature succulent, Argyroderma pearsonii

Allan G. Ellis, Arthur E. Weis, Brandon S. Gaut

Journal:

New Phytologist

Year:

2007

Language:

english

File:

PDF, 357 KB

english, 2007

32

Selection on grain shattering genes and rates of rice domestication

Lin-Bin Zhang, Qihui Zhu, Zhi-Qiang Wu, Jeffrey Ross-Ibarra, Brandon S. Gaut, Song Ge, Tao Sang

Journal:

New Phytologist

Year:

2009

Language:

english

File:

PDF, 851 KB

english, 2009

33

10.1038/1695

Bennetzen, Jeffrey L., SanMiguel, Phillip, Gaut, Brandon S., Tikhonov, Alexander, Nakajima, Yuko

Journal:

Nature Genetics

Year:

1998

Language:

english

File:

PDF, 106 KB

english, 1998

34

A unified mixed-model method for association mapping that accounts for multiple levels of relatedness

Yu, Jianming, Pressoir, Gael, Briggs, William H, Vroh Bi, Irie, Yamasaki, Masanori, Doebley, John F, McMullen, Michael D, Gaut, Brandon S, Nielsen, Dahlia M, Holland, James B

Journal:

Nature Genetics

Year:

2005

Language:

english

File:

PDF, 226 KB

english, 2005

35

Recombination: an underappreciated factor in the evolution of plant genomes

Gaut, Brandon S., Wright, Stephen I., Rizzon, Carène, Dvorak, Jan, Anderson, Lorinda K.

Journal:

Nature Reviews Genetics

Year:

2007

Language:

english

File:

PDF, 516 KB

english, 2007

36

Evolution of genes and taxa: a primer

Jeff J. Doyle, Brandon S. Gaut

Journal:

Plant Molecular Biology

Year:

2000

Language:

english

File:

PDF, 208 KB

english, 2000

37

The evolution of transposable elements in natural populations of self-fertilizingArabidopsis thalianaand its outcrossing relativeArabidopsis lyrata

Steven Lockton, Brandon S Gaut

Journal:

BMC Evolutionary Biology

Year:

2010

Language:

english

File:

PDF, 517 KB

english, 2010

38

Transcription-related mutations and GC content drive variation in nucleotide substitution rates across the genomes ofArabidopsis thalianaandArabidopsis lyrata

Leah J DeRose-Wilson, Brandon S Gaut

Journal:

BMC Evolutionary Biology

Year:

2007

Language:

english

File:

PDF, 386 KB

english, 2007

39

A comparative computational analysis of nonautonomousHelitronelements between maize and rice

Michael Sweredoski, Leah DeRose-Wilson, Brandon S Gaut

Journal:

Year:

2008

Language:

english

File:

PDF, 1.11 MB

english, 2008

40

Adaptive selection of mitochondrial complex I subunits during primate radiation

Dan Mishmar, Eduardo Ruiz-Pesini, Mariana Mondragon-Palomino, Vincent Procaccio, Brandon Gaut, Douglas C. Wallace

Journal:

Year:

2006

Language:

english

File:

PDF, 469 KB

english, 2006

41

A triptych of the evolution of plant transposable elements

Maud I. Tenaillon, Jesse D. Hollister, Brandon S. Gaut

Journal:

Trends in Plant Science

Year:

2010

Language:

english

File:

PDF, 419 KB

english, 2010

42

Plant Molecular Evolution || || Front_matter

Doyle, Jeff J., Gaut, Brandon S.

Year:

2000

Language:

english

File:

PDF, 747 KB

english, 2000

43

Genome size variation in wild and cultivated maize along altitudinal gradients

Díez, Concepción M., Gaut, Brandon S., Meca, Esteban, Scheinvar, Enrique, Montes-Hernandez, Salvador, Eguiarte, Luis E., Tenaillon, Maud I.

Journal:

New Phytologist

Year:

2013

Language:

english

File:

PDF, 1.41 MB

english, 2013

44

Evolution ofEscherichia colirifampicin resistance in an antibiotic-free environment during thermal stress

Alejandra Rodríguez-Verdugo, Brandon S Gaut, Olivier Tenaillon

Journal:

BMC Evolutionary Biology

Year:

2013

Language:

english

File:

PDF, 407 KB

english, 2013

45

Plant Molecular Evolution || A short history of MADS-box genes in plants

Doyle, Jeff J., Gaut, Brandon S.

Year:

2000

Language:

english

File:

PDF, 6.42 MB

english, 2000

46

Plant Molecular Evolution ||

Doyle, Jeff J., Gaut, Brandon S.

Year:

2000

Language:

english

File:

PDF, 747 KB

english, 2000

47

Substitution Rate Comparisons between Grasses and Palms: Synonymous Rate Differences at the Nuclear Gene Adh Parallel Rate Differences at the Plastid Gene rbcL

Brandon S. Gaut, Brian R. Morton, Bonnie C. McCaig and Michael T. Clegg

Journal:

Proceedings of the National Academy of Sciences

Year:

1996

Language:

english

File:

PDF, 1.57 MB

english, 1996

48

Evolution of Alcohol Dehydrogenase Genes in the Palm and Grass Families

Brian R. Morton, Brandon S. Gaut and Michael T. Clegg

Journal:

Proceedings of the National Academy of Sciences

Year:

1996

Language:

english

File:

PDF, 1.05 MB

english, 1996

49

DNA Sequence Evidence for the Segmental Allotetraploid Origin of Maize

Brandon S. Gaut and John F. Doebley

Journal:

Proceedings of the National Academy of Sciences

Year:

1997

Language:

english

File:

PDF, 1.32 MB

english, 1997

50

Investigation of the Bottleneck Leading to the Domestication of Maize

Adam Eyre-Walker, Rebecca L. Gaut, Holly Hilton, Dawn L. Feldman and Brandon S. Gaut

Journal:

Proceedings of the National Academy of Sciences

Year:

1998

Language:

english

File:

PDF, 1.07 MB

english, 1998